For me, the following trophies do not pop:
Treasure Seeker - Open a Token Chest
Potion Collector - Obtain a total of 10 potions (you have 999999999)
You snooze, you lose - Pickpocket a guard affected by a blowdart.
Patron of the arts - Pay Musicians 5 times
Patron of Sell-Swords - Pay 5 Mercenaries
Patron of Industry - Pay merchant groups 5 times
Spread the News - Use the services of a Munadi 3 times.
I will update if things pop beyond this, but I've paid the merchants/musicians/ munadi's and mercenaries already, same with the other requirements.